Variant report
| Variant | rs4462144 |
|---|---|
| Chromosome Location | chr1:190317902-190317903 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:190317641..190318618-chr20:52402718..52403693,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs2419064 | 1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs491162 | 1.00[CHB][hapmap] |
| rs6428017 | 1.00[AMR][1000 genomes] |
| rs6673983 | 1.00[CHB][hapmap];1.00[AMR][1000 genomes] |
| rs6684241 | 1.00[AMR][1000 genomes] |
| rs6701370 | 1.00[CHB][hapmap] |
| rs74130707 | 1.00[ASN][1000 genomes] |
| rs74130750 | 1.00[AMR][1000 genomes] |
| rs74130763 | 1.00[AMR][1000 genomes] |
| rs7530507 | 1.00[AMR][1000 genomes] |
| rs7530528 | 1.00[CHB][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv548532 | chr1:189758772-190371671 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv932040 | chr1:190005334-190914580 | Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv1013402 | chr1:190197674-190332464 | Enhancers ZNF genes & repeats Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 4 | nsv535246 | chr1:190197674-190332464 | Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 5 | nsv430013 | chr1:190288297-190351677 | Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
