Variant report

Variant	rs12095568
Chromosome Location	chr1:226930475-226930476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12061458	1.00[AMR][1000 genomes]
rs12062664	1.00[AMR][1000 genomes]
rs12066190	1.00[AMR][1000 genomes]
rs12066208	1.00[AMR][1000 genomes]
rs12083300	1.00[AMR][1000 genomes]
rs12093413	1.00[AMR][1000 genomes]
rs12093806	0.80[AFR][1000 genomes]
rs12096709	0.80[AFR][1000 genomes]
rs7533208	1.00[AMR][1000 genomes]
rs7535863	1.00[AMR][1000 genomes]
rs7555672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997468	chr1:226858660-226975311	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv535316	chr1:226858660-226975311	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226929400-226935000	Weak transcription	Fetal Thymus	thymus
2	chr1:226929400-226936200	Weak transcription	Thymus	Thymus
3	chr1:226929800-226931600	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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