Variant report

Variant	rs7533208
Chromosome Location	chr1:226964624-226964625
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12061458	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062664	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12066190	1.00[AMR][1000 genomes]
rs12066208	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12071493	0.84[AFR][1000 genomes]
rs12083300	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12093413	1.00[AMR][1000 genomes]
rs12095568	1.00[AMR][1000 genomes]
rs6664456	1.00[AFR][1000 genomes]
rs7526563	1.00[AFR][1000 genomes]
rs7535863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7555672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997468	chr1:226858660-226975311	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv535316	chr1:226858660-226975311	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226956800-226966200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:226960600-226969600	Weak transcription	Brain Anterior Caudate	brain
3	chr1:226960600-226970000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:226961600-226969200	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:226961800-226967200	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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