Variant report

Variant	rs12097259
Chromosome Location	chr1:62519836-62519837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:62517802..62520189-chr1:62523523..62525175,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10127708	0.80[EUR][1000 genomes]
rs10493314	0.86[ASN][1000 genomes]
rs11799564	0.89[EUR][1000 genomes]
rs12066543	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12732781	0.86[ASN][1000 genomes]
rs12750860	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17122994	0.86[ASN][1000 genomes]
rs17123003	0.84[ASN][1000 genomes]
rs2476181	0.86[ASN][1000 genomes]
rs2476185	0.86[ASN][1000 genomes]
rs2498957	0.83[ASN][1000 genomes]
rs2498981	0.86[ASN][1000 genomes]
rs2498982	0.86[ASN][1000 genomes]
rs4072368	0.82[ASN][1000 genomes]
rs4072369	0.90[ASN][1000 genomes]
rs4072372	0.90[ASN][1000 genomes]
rs4073681	0.90[ASN][1000 genomes]
rs4316389	0.82[ASN][1000 genomes]
rs4915602	0.82[ASN][1000 genomes]
rs7551942	0.83[ASN][1000 genomes]
rs991007	0.86[EUR][1000 genomes]
rs991191	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004446	chr1:62394631-62813533	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv534984	chr1:62394631-62813533	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1001667	chr1:62407786-62649838	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62458800-62521400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr1:62459000-62530600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr1:62459200-62550000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr1:62460000-62544600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr1:62469000-62533600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:62484400-62523000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:62484400-62562200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:62488400-62521200	Weak transcription	Ovary	ovary
9	chr1:62494600-62524400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:62494600-62524400	Weak transcription	Esophagus	oesophagus
11	chr1:62495200-62544800	Weak transcription	Liver	Liver
12	chr1:62502200-62520600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:62503600-62520200	Weak transcription	Fetal Brain Male	brain
14	chr1:62504800-62531400	Weak transcription	Aorta	Aorta
15	chr1:62507200-62523000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:62507200-62523600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr1:62507400-62524600	Weak transcription	HepG2	liver
18	chr1:62508200-62628400	Weak transcription	Colonic Mucosa	Colon
19	chr1:62508800-62532000	Weak transcription	Fetal Stomach	stomach
20	chr1:62511400-62531600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr1:62511400-62531800	Weak transcription	NHEK	skin
22	chr1:62511600-62520000	Weak transcription	Right Ventricle	heart
23	chr1:62511600-62522600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:62511600-62522800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:62511600-62531200	Weak transcription	Lung	lung
26	chr1:62511800-62521600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:62511800-62522600	Weak transcription	Psoas Muscle	Psoas
28	chr1:62511800-62523200	Weak transcription	Fetal Heart	heart
29	chr1:62511800-62529600	Weak transcription	Right Atrium	heart
30	chr1:62512200-62524200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr1:62514000-62522800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr1:62514000-62522800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr1:62514000-62522800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr1:62514000-62524400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr1:62515200-62523200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:62515400-62552400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr1:62515800-62522600	Weak transcription	Left Ventricle	heart
38	chr1:62516800-62524400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr1:62518200-62531600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr1:62518200-62531800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr1:62518800-62521600	Weak transcription	Fetal Intestine Small	intestine
42	chr1:62518800-62531600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:62518800-62532000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr1:62519000-62521000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr1:62519000-62523400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr1:62519000-62530600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr1:62519000-62532000	Weak transcription	Fetal Intestine Large	intestine
48	chr1:62519000-62541600	Weak transcription	HMEC	breast
49	chr1:62519000-62550000	Weak transcription	Primary T cells from cord blood	blood
50	chr1:62519000-62550000	Weak transcription	Pancreas	Pancrea

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