Variant report

Variant	rs12097645
Chromosome Location	chr1:84329408-84329409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11163873	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11163880	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11163881	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11163882	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12057657	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12072084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12080852	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12083946	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12088308	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12354247	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28366451	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41293009	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45551036	1.00[EUR][1000 genomes]
rs7532131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7534340	1.00[AMR][1000 genomes]
rs7540150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7551339	1.00[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84326800-84330800	Weak transcription	HSMM	muscle
2	chr1:84326800-84348200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:84326800-84352600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr1:84327000-84345000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:84327000-84348400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:84327000-84352400	Weak transcription	Aorta	Aorta
7	chr1:84327000-84361800	Weak transcription	Fetal Brain Female	brain
8	chr1:84327000-84375400	Weak transcription	Brain Germinal Matrix	brain
9	chr1:84327200-84348600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:84327200-84349600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:84327200-84351400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:84327400-84345000	Weak transcription	Brain Anterior Caudate	brain
13	chr1:84328200-84354400	Weak transcription	Brain Substantia Nigra	brain
14	chr1:84328400-84329600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr1:84328600-84330000	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:84328800-84344800	Weak transcription	Brain Hippocampus Middle	brain
17	chr1:84329000-84352200	Weak transcription	Brain Angular Gyrus	brain
18	chr1:84329000-84373000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr1:84329200-84330600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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