Variant report

Variant	rs28366451
Chromosome Location	chr1:84430279-84430280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84417325..84419048-chr1:84429082..84431305,2	K562	blood:

Variant related genes	Relation type
ENSG00000137941	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11163873	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11163880	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11163881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11163882	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12057657	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070052	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12072084	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075034	0.81[AFR][1000 genomes]
rs12080852	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12083946	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12088308	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12097645	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12354247	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41293009	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45551036	1.00[EUR][1000 genomes]
rs7532131	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7534340	1.00[AMR][1000 genomes]
rs7540150	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7551339	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871551	chr1:84354464-84453223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84416800-84436400	Weak transcription	Psoas Muscle	Psoas
2	chr1:84420400-84435800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:84425200-84433000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:84425200-84453200	Weak transcription	NHLF	lung
5	chr1:84426200-84452200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:84426600-84431600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:84426800-84435800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:84427000-84430400	Enhancers	Brain Anterior Caudate	brain
9	chr1:84427800-84432600	Weak transcription	NHDF-Ad	bronchial
10	chr1:84427800-84436400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:84427800-84444600	Weak transcription	HSMM	muscle
12	chr1:84428000-84430800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr1:84428400-84430800	Enhancers	Brain Hippocampus Middle	brain
14	chr1:84429000-84431800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:84429000-84436400	Weak transcription	Pancreas	Pancrea
16	chr1:84429200-84430600	Enhancers	Rectal Smooth Muscle	rectum
17	chr1:84429200-84445400	Weak transcription	Aorta	Aorta
18	chr1:84429800-84430600	Enhancers	Brain Substantia Nigra	brain
19	chr1:84430000-84430400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:84430000-84430600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:84430000-84430800	Enhancers	Brain Angular Gyrus	brain
22	chr1:84430000-84430800	Enhancers	Brain Cingulate Gyrus	brain
23	chr1:84430200-84432000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:84430200-84441600	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links