Variant report

Variant	rs12097746
Chromosome Location	chr1:151722789-151722790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151721403..151723177-chr1:151735792..151738384,3	MCF-7	breast:
2	chr1:151720479..151723195-chr1:151726990..151729496,2	MCF-7	breast:
3	chr1:151719068..151723308-chr1:151725326..151729049,4	K562	blood:
4	chr1:151721010..151724509-chr1:151727967..151731258,3	MCF-7	breast:
5	chr1:151722015..151724126-chr1:151837902..151840687,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OAZ3-7	chr1:151722785-151723096	NONHSAT006417

No data

No data

Variant related genes	Relation type
ENSG00000236940	Chromatin interaction
ENSG00000232937	Chromatin interaction
ENSG00000143450	Chromatin interaction
ENSG00000143436	Chromatin interaction
ENSG00000269621	Chromatin interaction

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151712800-151729400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:151712800-151731800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:151721400-151727600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:151721400-151730600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:151722400-151729200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:151722600-151722800	Enhancers	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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