Variant report

Variant	rs12071974
Chromosome Location	chr1:151726081-151726082
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151719068..151723308-chr1:151725326..151729049,4	K562	blood:
2	chr1:151725268..151728071-chr1:151729793..151731866,2	MCF-7	breast:
3	chr1:151711448..151713959-chr1:151724394..151726703,2	K562	blood:

Variant related genes	Relation type
ENSG00000206980	Chromatin interaction
ENSG00000236940	Chromatin interaction

rs_ID	r²[population]
rs11204883	1.00[LWK][hapmap];0.81[AFR][1000 genomes]
rs11204889	0.89[AFR][1000 genomes]
rs12058488	0.98[AFR][1000 genomes]
rs12063119	0.87[AFR][1000 genomes]
rs12066062	0.91[LWK][hapmap]
rs12067532	0.86[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs12069263	0.89[AFR][1000 genomes]
rs12077740	0.91[LWK][hapmap]
rs12079888	0.91[LWK][hapmap]
rs12091920	0.91[LWK][hapmap]
rs12092024	0.83[AFR][1000 genomes]
rs12097336	1.00[LWK][hapmap]
rs12097746	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs1937356	1.00[LWK][hapmap]
rs4308981	1.00[LWK][hapmap];0.81[AFR][1000 genomes]
rs59245141	0.81[AFR][1000 genomes]
rs59917650	0.81[AFR][1000 genomes]
rs7522224	0.87[AFR][1000 genomes]

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151712800-151729400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:151712800-151731800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:151721400-151727600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:151721400-151730600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:151722400-151729200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:151722800-151729200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:151723000-151728000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:151723000-151729200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:151723400-151726800	Weak transcription	Primary T cells from cord blood	blood
10	chr1:151723400-151729000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:151723400-151730000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:151723400-151730000	Weak transcription	HSMM	muscle
13	chr1:151723800-151729400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:151723800-151730600	Weak transcription	Fetal Brain Male	brain
15	chr1:151724000-151729200	Weak transcription	Dnd41	blood
16	chr1:151724200-151727200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:151724400-151728200	Weak transcription	Liver	Liver
18	chr1:151724600-151727200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr1:151724800-151729200	Weak transcription	Fetal Stomach	stomach
20	chr1:151724800-151729600	Weak transcription	Brain Germinal Matrix	brain
21	chr1:151724800-151729800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:151725000-151727400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr1:151725000-151727800	Weak transcription	Fetal Muscle Leg	muscle
24	chr1:151725000-151728600	Weak transcription	Fetal Brain Female	brain
25	chr1:151725200-151728000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:151725200-151728800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:151725200-151729400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr1:151725400-151729200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr1:151725400-151729600	Weak transcription	Aorta	Aorta
30	chr1:151725600-151730000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr1:151725600-151730600	Weak transcription	HSMMtube	muscle
32	chr1:151725800-151727400	Weak transcription	Brain Anterior Caudate	brain
33	chr1:151725800-151727400	Weak transcription	Brain Substantia Nigra	brain
34	chr1:151725800-151727600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr1:151725800-151727600	Weak transcription	Left Ventricle	heart
36	chr1:151725800-151727600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr1:151725800-151729200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr1:151725800-151729400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:151725800-151730000	Weak transcription	A549	lung
40	chr1:151725800-151730600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:151726000-151728000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr1:151726000-151728000	Weak transcription	NHEK	skin
43	chr1:151726000-151728200	Weak transcription	Gastric	stomach
44	chr1:151726000-151729200	Weak transcription	Brain Hippocampus Middle	brain
45	chr1:151726000-151729600	Weak transcription	Fetal Thymus	thymus
46	chr1:151726000-151729600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr1:151726000-151730400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:151726000-151730600	Weak transcription	Pancreas	Pancrea

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