Variant report

Variant	rs12077740
Chromosome Location	chr1:151665325-151665326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151664863..151666214-chr1:151706833..151708161,20	MCF-7	breast:
2	chr1:151664791..151666370-chr1:151707222..151708158,5	MCF-7	breast:
3	chr1:151507775..151508377-chr1:151665276..151665782,2	MCF-7	breast:
4	chr1:151510443..151513017-chr1:151663808..151665952,2	MCF-7	breast:
5	chr1:151659536..151662193-chr1:151663532..151665631,2	MCF-7	breast:
6	chr1:151665244..151665843-chr1:151803006..151803905,2	MCF-7	breast:
7	chr1:151665154..151666195-chr1:151707215..151708114,3	K562	blood:
8	chr1:151664163..151666022-chr1:151807533..151809053,2	MCF-7	breast:
9	chr1:151546166..151548100-chr1:151663525..151665692,2	K562	blood:
10	chr1:151665022..151667195-chr1:151671902..151674040,3	K562	blood:
11	chr1:151665226..151665795-chr1:151853753..151854749,3	MCF-7	breast:
12	chr1:151663513..151665875-chr1:151762843..151764618,2	MCF-7	breast:
13	chr1:151665285..151666015-chr1:151762695..151763380,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000203288	Chromatin interaction
ENSG00000227045	Chromatin interaction
ENSG00000143375	Chromatin interaction
ENSG00000232536	Chromatin interaction
ENSG00000182134	Chromatin interaction
ENSG00000143367	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11204851	1.00[YRI][hapmap]
rs11204855	1.00[YRI][hapmap]
rs11204862	1.00[ASN][1000 genomes]
rs11204863	0.97[AFR][1000 genomes]
rs11204875	0.92[AFR][1000 genomes]
rs11204883	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11807133	0.83[ASN][1000 genomes]
rs12065239	1.00[YRI][hapmap]
rs12066062	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12067532	0.90[LWK][hapmap]
rs12069509	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12071974	0.91[LWK][hapmap]
rs12071996	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs12072152	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12079888	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12090093	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12091920	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12092024	0.82[AFR][1000 genomes]
rs12097336	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap]
rs1937356	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2008633	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4308981	0.91[LWK][hapmap];0.80[YRI][hapmap]
rs57720575	1.00[ASN][1000 genomes]
rs57983158	0.82[AFR][1000 genomes]
rs6658837	0.92[AFR][1000 genomes]
rs6685811	1.00[YRI][hapmap]
rs6686178	0.88[YRI][hapmap]
rs6701792	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7540761	1.00[YRI][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:151611600-151668200	Weak transcription	Gastric	stomach
3	chr1:151618000-151667600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:151626800-151665400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:151627200-151670600	Weak transcription	Small Intestine	intestine
6	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:151628200-151669800	Weak transcription	Esophagus	oesophagus
8	chr1:151632200-151667400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:151638600-151675600	Weak transcription	Psoas Muscle	Psoas
10	chr1:151643800-151669800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:151646600-151665800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:151653400-151669400	Weak transcription	HSMMtube	muscle
13	chr1:151653400-151671600	Weak transcription	Stomach Mucosa	stomach
14	chr1:151654600-151666200	Weak transcription	HMEC	breast
15	chr1:151654800-151666000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:151654800-151678000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:151655000-151665800	Weak transcription	HUVEC	blood vessel
18	chr1:151657200-151665400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr1:151658000-151674800	Strong transcription	Fetal Muscle Leg	muscle
20	chr1:151659200-151667600	Weak transcription	Fetal Brain Male	brain
21	chr1:151659600-151665400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:151660400-151675400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr1:151661600-151675400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:151662000-151670400	Weak transcription	Fetal Heart	heart
25	chr1:151663000-151675400	Strong transcription	Fetal Stomach	stomach
26	chr1:151663200-151667200	Strong transcription	Colonic Mucosa	Colon
27	chr1:151663200-151677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr1:151663200-151683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr1:151664200-151672800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:151664200-151674200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr1:151664200-151674600	Strong transcription	Primary T cells from cord blood	blood
32	chr1:151664200-151674800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr1:151664200-151675000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr1:151664400-151665400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr1:151664400-151666600	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr1:151664400-151668800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:151664400-151672200	Strong transcription	Fetal Intestine Small	intestine
38	chr1:151664400-151672400	Strong transcription	Fetal Intestine Large	intestine
39	chr1:151664400-151672400	Strong transcription	Thymus	Thymus
40	chr1:151664400-151674400	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr1:151664400-151674600	Strong transcription	Fetal Muscle Trunk	muscle
42	chr1:151664400-151674600	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr1:151664400-151674800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:151664400-151675400	Strong transcription	Stomach Smooth Muscle	stomach
45	chr1:151664600-151667200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:151664600-151667200	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr1:151664600-151674200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr1:151664600-151674600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr1:151664600-151674600	Strong transcription	Fetal Thymus	thymus
50	chr1:151664600-151675000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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