Variant report

Variant	rs2008633
Chromosome Location	chr1:151668847-151668848
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151668533..151670449-chr1:151674606..151677478,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11204851	1.00[YRI][hapmap]
rs11204855	1.00[YRI][hapmap]
rs11204862	1.00[ASN][1000 genomes]
rs11204863	0.97[AFR][1000 genomes]
rs11204875	0.92[AFR][1000 genomes]
rs11204883	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11807133	0.83[ASN][1000 genomes]
rs12065239	1.00[YRI][hapmap]
rs12066062	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12069509	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12071996	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs12072152	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12077740	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12079888	1.00[YRI][hapmap]
rs12090093	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12091920	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12092024	0.82[AFR][1000 genomes]
rs12097336	1.00[YRI][hapmap]
rs1937356	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs4308981	0.80[YRI][hapmap]
rs57720575	1.00[ASN][1000 genomes]
rs57983158	0.82[AFR][1000 genomes]
rs6658837	0.92[AFR][1000 genomes]
rs6701792	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7540761	1.00[YRI][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:151627200-151670600	Weak transcription	Small Intestine	intestine
3	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:151628200-151669800	Weak transcription	Esophagus	oesophagus
5	chr1:151638600-151675600	Weak transcription	Psoas Muscle	Psoas
6	chr1:151643800-151669800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:151653400-151669400	Weak transcription	HSMMtube	muscle
8	chr1:151653400-151671600	Weak transcription	Stomach Mucosa	stomach
9	chr1:151654800-151678000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:151658000-151674800	Strong transcription	Fetal Muscle Leg	muscle
11	chr1:151660400-151675400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:151661600-151675400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:151662000-151670400	Weak transcription	Fetal Heart	heart
14	chr1:151663000-151675400	Strong transcription	Fetal Stomach	stomach
15	chr1:151663200-151677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:151663200-151683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr1:151664200-151672800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:151664200-151674200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr1:151664200-151674600	Strong transcription	Primary T cells from cord blood	blood
20	chr1:151664200-151674800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:151664200-151675000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr1:151664400-151672200	Strong transcription	Fetal Intestine Small	intestine
23	chr1:151664400-151672400	Strong transcription	Fetal Intestine Large	intestine
24	chr1:151664400-151672400	Strong transcription	Thymus	Thymus
25	chr1:151664400-151674400	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr1:151664400-151674600	Strong transcription	Fetal Muscle Trunk	muscle
27	chr1:151664400-151674600	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr1:151664400-151674800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:151664400-151675400	Strong transcription	Stomach Smooth Muscle	stomach
30	chr1:151664600-151674200	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr1:151664600-151674600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr1:151664600-151674600	Strong transcription	Fetal Thymus	thymus
33	chr1:151664600-151675000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr1:151664800-151672200	Strong transcription	Brain Germinal Matrix	brain
35	chr1:151664800-151674400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:151664800-151674600	Strong transcription	Adipose Nuclei	Adipose
37	chr1:151664800-151674600	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr1:151664800-151674800	Strong transcription	Spleen	Spleen
39	chr1:151665000-151670000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
40	chr1:151665000-151673200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr1:151665000-151673800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr1:151665000-151673800	Strong transcription	Brain Cingulate Gyrus	brain
43	chr1:151665000-151674000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr1:151665000-151674000	Strong transcription	Dnd41	blood
45	chr1:151665000-151674200	Strong transcription	Duodenum Mucosa	Duodenum
46	chr1:151665000-151674400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:151665000-151674600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr1:151665000-151674600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr1:151665000-151674600	Strong transcription	Liver	Liver
50	chr1:151665000-151674600	Strong transcription	Fetal Lung	lung

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