Variant report

Variant	rs11807133
Chromosome Location	chr1:151686387-151686388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr1:151686317-151687870	HEK293-T-REx	kidney:	n/a	chr1:151687484-151687505 chr1:151687507-151687528 chr1:151687552-151687573 chr1:151686655-151686664
2	REST	chr1:151686329-151686761	MCF-7	breast:	n/a	chr1:151686653-151686671

No.	Distal block	Cell Line	Cell type
1	chr1:151677702..151679234-chr1:151685663..151687582,2	K562	blood:
2	chr1:151684351..151686614-chr1:151735552..151738203,2	K562	blood:
3	chr1:151684278..151687580-chr1:151688035..151691948,5	MCF-7	breast:
4	chr1:151676777..151682969-chr1:151683840..151687385,6	K562	blood:
5	chr1:151685651..151688876-chr1:151692359..151694505,3	MCF-7	breast:
6	chr1:151686149..151687760-chr1:151781194..151783599,2	K562	blood:
7	chr1:151681469..151683266-chr1:151683994..151686437,2	K562	blood:

Variant related genes	Relation type
CELF3	TF binding region
ENSG00000143450	Chromatin interaction
ENSG00000143436	Chromatin interaction
ENSG00000232937	Chromatin interaction
ENSG00000159409	Chromatin interaction
ENSG00000240510	Chromatin interaction
ENSG00000178796	Chromatin interaction

rs_ID	r²[population]
rs11204862	0.83[ASN][1000 genomes]
rs12066062	0.83[ASN][1000 genomes]
rs12069509	0.83[ASN][1000 genomes]
rs12071996	0.83[ASN][1000 genomes]
rs12072152	0.83[ASN][1000 genomes]
rs12077740	0.83[ASN][1000 genomes]
rs2008633	0.83[ASN][1000 genomes]
rs57720575	0.83[ASN][1000 genomes]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151667000-151687400	Weak transcription	K562	blood
2	chr1:151670000-151689800	Weak transcription	Pancreas	Pancrea
3	chr1:151674200-151687400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:151680200-151687400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:151680800-151686800	Enhancers	Fetal Brain Male	brain
6	chr1:151682000-151686400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:151683400-151687800	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
8	chr1:151683400-151688600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:151683600-151686400	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:151683800-151687000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:151684000-151687200	Transcr. at gene 5' and 3'	Brain Germinal Matrix	brain
12	chr1:151684400-151686400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr1:151684400-151687200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:151684400-151687200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:151684400-151689600	Active TSS	Brain Anterior Caudate	brain
16	chr1:151684800-151686400	Enhancers	HepG2	liver
17	chr1:151685400-151689800	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr1:151685400-151690000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:151685600-151686400	Enhancers	Colonic Mucosa	Colon
20	chr1:151685600-151686600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
21	chr1:151685600-151687000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:151685600-151690400	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr1:151685800-151686400	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr1:151685800-151687000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:151685800-151687200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:151685800-151689400	Weak transcription	A549	lung
27	chr1:151686000-151686400	Enhancers	Brain Cingulate Gyrus	brain
28	chr1:151686000-151686600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr1:151686000-151686800	Enhancers	Fetal Intestine Large	intestine
30	chr1:151686000-151687000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr1:151686000-151687000	Genic enhancers	Fetal Intestine Small	intestine
32	chr1:151686000-151687000	Enhancers	NHEK	skin
33	chr1:151686000-151687200	Enhancers	HMEC	breast
34	chr1:151686200-151686600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:151686200-151686800	Weak transcription	Brain Angular Gyrus	brain
36	chr1:151686200-151686800	Enhancers	Esophagus	oesophagus

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