Variant report

Variant	rs6658837
Chromosome Location	chr1:151643150-151643151
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151642498..151644788-chr1:151650470..151653189,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11204863	0.90[AFR][1000 genomes]
rs11204875	0.90[AFR][1000 genomes]
rs11204883	0.85[AFR][1000 genomes]
rs12066062	0.92[AFR][1000 genomes]
rs12069509	0.92[AFR][1000 genomes]
rs12072152	0.92[AFR][1000 genomes]
rs12077740	0.92[AFR][1000 genomes]
rs12090093	0.90[AFR][1000 genomes]
rs12091920	0.88[AFR][1000 genomes]
rs1937356	0.90[AFR][1000 genomes]
rs2008633	0.92[AFR][1000 genomes]
rs6701792	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2843	chr1:151600069-151644709	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151588200-151665200	Weak transcription	Aorta	Aorta
2	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:151594000-151652800	Weak transcription	Right Ventricle	heart
4	chr1:151603000-151663200	Weak transcription	Colonic Mucosa	Colon
5	chr1:151610600-151652200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:151610600-151665000	Weak transcription	Lung	lung
7	chr1:151611600-151643800	Weak transcription	Pancreas	Pancrea
8	chr1:151611600-151668200	Weak transcription	Gastric	stomach
9	chr1:151612800-151652400	Weak transcription	HMEC	breast
10	chr1:151618000-151667600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:151622800-151643600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:151625600-151644800	Strong transcription	Dnd41	blood
13	chr1:151626800-151665400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr1:151627200-151655600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr1:151627200-151659800	Weak transcription	Spleen	Spleen
16	chr1:151627200-151670600	Weak transcription	Small Intestine	intestine
17	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:151628000-151646000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr1:151628200-151652800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:151628200-151669800	Weak transcription	Esophagus	oesophagus
21	chr1:151629200-151643400	Weak transcription	Brain Substantia Nigra	brain
22	chr1:151631000-151643800	Weak transcription	A549	lung
23	chr1:151631200-151652000	Weak transcription	NHEK	skin
24	chr1:151631200-151652800	Weak transcription	NHLF	lung
25	chr1:151632000-151643200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr1:151632200-151643600	Weak transcription	Fetal Stomach	stomach
27	chr1:151632200-151665000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr1:151632200-151667400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr1:151632400-151643600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:151632400-151652600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:151632400-151664400	Weak transcription	Thymus	Thymus
32	chr1:151632600-151653000	Weak transcription	HSMMtube	muscle
33	chr1:151634000-151652800	Weak transcription	NHDF-Ad	bronchial
34	chr1:151634600-151657600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr1:151634800-151652000	Weak transcription	HUVEC	blood vessel
36	chr1:151634800-151652800	Weak transcription	Stomach Mucosa	stomach
37	chr1:151635000-151654600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr1:151635200-151652600	Weak transcription	Left Ventricle	heart
39	chr1:151635400-151643600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr1:151635800-151652600	Weak transcription	Hela-S3	cervix
41	chr1:151636000-151643600	Weak transcription	Fetal Intestine Small	intestine
42	chr1:151636000-151650000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr1:151637000-151643600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr1:151637000-151644200	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr1:151638000-151643400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr1:151638000-151644200	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr1:151638400-151644000	Strong transcription	Fetal Thymus	thymus
48	chr1:151638400-151653200	Weak transcription	Fetal Heart	heart
49	chr1:151638600-151675600	Weak transcription	Psoas Muscle	Psoas
50	chr1:151638800-151653200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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