Variant report

Variant	rs12091920
Chromosome Location	chr1:151651301-151651302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151642498..151644788-chr1:151650470..151653189,2	MCF-7	breast:
2	chr1:151511602..151513634-chr1:151649014..151651387,2	MCF-7	breast:
3	chr1:151650313..151653139-chr2:15236281..15237910,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232536	Chromatin interaction
ENSG00000143367	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11204851	1.00[YRI][hapmap]
rs11204855	1.00[YRI][hapmap]
rs11204863	0.93[AFR][1000 genomes]
rs11204875	0.88[AFR][1000 genomes]
rs11204883	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12065239	1.00[YRI][hapmap]
rs12066062	1.00[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12067532	0.90[LWK][hapmap]
rs12069509	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12071974	0.91[LWK][hapmap]
rs12071996	1.00[YRI][hapmap]
rs12072152	0.95[AFR][1000 genomes]
rs12077740	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12079888	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12090093	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12097336	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap]
rs1937356	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2008633	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4308981	0.91[LWK][hapmap];0.80[YRI][hapmap]
rs6658837	0.88[AFR][1000 genomes]
rs6685811	1.00[YRI][hapmap]
rs6686178	0.88[YRI][hapmap]
rs6701792	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7540761	1.00[YRI][hapmap]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151588200-151665200	Weak transcription	Aorta	Aorta
2	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:151594000-151652800	Weak transcription	Right Ventricle	heart
4	chr1:151603000-151663200	Weak transcription	Colonic Mucosa	Colon
5	chr1:151610600-151652200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:151610600-151665000	Weak transcription	Lung	lung
7	chr1:151611600-151668200	Weak transcription	Gastric	stomach
8	chr1:151612800-151652400	Weak transcription	HMEC	breast
9	chr1:151618000-151667600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:151626800-151665400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:151627200-151655600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr1:151627200-151659800	Weak transcription	Spleen	Spleen
13	chr1:151627200-151670600	Weak transcription	Small Intestine	intestine
14	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:151628200-151652800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr1:151628200-151669800	Weak transcription	Esophagus	oesophagus
17	chr1:151631200-151652000	Weak transcription	NHEK	skin
18	chr1:151631200-151652800	Weak transcription	NHLF	lung
19	chr1:151632200-151665000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:151632200-151667400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr1:151632400-151652600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:151632400-151664400	Weak transcription	Thymus	Thymus
23	chr1:151632600-151653000	Weak transcription	HSMMtube	muscle
24	chr1:151634000-151652800	Weak transcription	NHDF-Ad	bronchial
25	chr1:151634600-151657600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr1:151634800-151652000	Weak transcription	HUVEC	blood vessel
27	chr1:151634800-151652800	Weak transcription	Stomach Mucosa	stomach
28	chr1:151635000-151654600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr1:151635200-151652600	Weak transcription	Left Ventricle	heart
30	chr1:151635800-151652600	Weak transcription	Hela-S3	cervix
31	chr1:151638400-151653200	Weak transcription	Fetal Heart	heart
32	chr1:151638600-151675600	Weak transcription	Psoas Muscle	Psoas
33	chr1:151638800-151653200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr1:151639200-151652800	Weak transcription	GM12878-XiMat	blood
35	chr1:151642000-151665000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr1:151642200-151653000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr1:151642200-151659600	Weak transcription	HepG2	liver
38	chr1:151642200-151665000	Weak transcription	K562	blood
39	chr1:151642800-151652200	Weak transcription	NH-A	brain
40	chr1:151642800-151656600	Weak transcription	Fetal Kidney	kidney
41	chr1:151642800-151665000	Weak transcription	Fetal Brain Female	brain
42	chr1:151643000-151652600	Weak transcription	HSMM	muscle
43	chr1:151643000-151655400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr1:151643000-151665000	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr1:151643200-151652200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr1:151643200-151652800	Weak transcription	Osteobl	bone
47	chr1:151643200-151653200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr1:151643200-151659000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr1:151643400-151652200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:151643600-151665000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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