Variant report

Variant	rs6701792
Chromosome Location	chr1:151678035-151678036
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr1:151678020-151678684	K562	blood:	n/a	n/a
2	POLR2A	chr1:151675065-151679627	H1-neurons	neurons:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151511777..151514221-chr1:151676659..151678306,2	MCF-7	breast:
2	chr1:151677618..151679367-chr1:151711033..151713298,2	MCF-7	breast:
3	chr1:151677452..151679689-chr1:151734697..151737638,2	MCF-7	breast:
4	chr1:151677367..151680039-chr1:151802606..151805197,3	MCF-7	breast:
5	chr1:151671136..151674505-chr1:151674889..151678422,3	K562	blood:
6	chr1:151677702..151679234-chr1:151685663..151687582,2	K562	blood:
7	chr1:151678027..151678884-chr1:151707284..151708098,3	MCF-7	breast:
8	chr1:151678020..151678605-chr1:151808685..151809547,3	MCF-7	breast:
9	chr1:151674334..151676569-chr1:151677711..151679757,3	MCF-7	breast:
10	chr1:151677595..151679984-chr1:151683063..151685340,3	K562	blood:

No data

Variant related genes	Relation type
RIIAD1	TF binding region
ENSG00000240510	TF binding region
ENSG00000143436	Chromatin interaction
ENSG00000227045	Chromatin interaction
ENSG00000143367	Chromatin interaction
ENSG00000143450	Chromatin interaction
ENSG00000232536	Chromatin interaction
ENSG00000143365	Chromatin interaction

rs_ID	r²[population]
rs11204851	1.00[YRI][hapmap]
rs11204855	1.00[YRI][hapmap]
rs11204863	0.97[AFR][1000 genomes]
rs11204875	0.92[AFR][1000 genomes]
rs11204883	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs12065239	1.00[YRI][hapmap]
rs12066062	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12069509	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12071996	1.00[YRI][hapmap]
rs12072152	1.00[AFR][1000 genomes]
rs12077740	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12079888	1.00[YRI][hapmap]
rs12090093	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12091920	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12092024	0.82[AFR][1000 genomes]
rs12097336	1.00[YRI][hapmap]
rs1937356	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2008633	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4308981	0.89[YRI][hapmap]
rs57983158	0.82[AFR][1000 genomes]
rs6658837	0.92[AFR][1000 genomes]
rs7540761	1.00[YRI][hapmap]

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151663200-151683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:151666000-151685400	Weak transcription	A549	lung
3	chr1:151667000-151687400	Weak transcription	K562	blood
4	chr1:151667800-151686000	Weak transcription	HMEC	breast
5	chr1:151669600-151681200	Strong transcription	Fetal Brain Female	brain
6	chr1:151670000-151689800	Weak transcription	Pancreas	Pancrea
7	chr1:151671400-151682600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:151672200-151680400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:151672400-151684800	Weak transcription	Small Intestine	intestine
10	chr1:151672800-151678400	Weak transcription	Colonic Mucosa	Colon
11	chr1:151673600-151678600	Strong transcription	Brain Germinal Matrix	brain
12	chr1:151673800-151680400	Strong transcription	Fetal Intestine Large	intestine
13	chr1:151673800-151682400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:151673800-151685200	Weak transcription	Fetal Kidney	kidney
15	chr1:151674000-151678600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:151674000-151682400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:151674000-151685400	Weak transcription	Gastric	stomach
18	chr1:151674200-151679800	Weak transcription	Right Ventricle	heart
19	chr1:151674200-151683200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:151674200-151683200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:151674200-151687400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr1:151674400-151679400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr1:151674600-151678200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr1:151674600-151678400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr1:151674600-151678600	Weak transcription	Lung	lung
26	chr1:151674600-151681800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr1:151674600-151682400	Weak transcription	Brain Substantia Nigra	brain
28	chr1:151674600-151682600	Weak transcription	Brain Hippocampus Middle	brain
29	chr1:151674600-151683200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr1:151674600-151683200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:151674600-151685200	Weak transcription	Fetal Lung	lung
32	chr1:151674600-151686000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr1:151674800-151678400	Weak transcription	Brain Anterior Caudate	brain
34	chr1:151674800-151679400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr1:151674800-151681800	Weak transcription	Brain Angular Gyrus	brain
36	chr1:151674800-151686200	Weak transcription	Esophagus	oesophagus
37	chr1:151675400-151681400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr1:151675600-151678600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:151675800-151678800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr1:151675800-151679600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr1:151675800-151681000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr1:151676000-151678800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:151676200-151678200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:151676200-151679200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr1:151676200-151682400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr1:151676400-151679400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr1:151676600-151678400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr1:151676600-151679200	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr1:151676600-151680000	Weak transcription	Spleen	Spleen
50	chr1:151676800-151678200	Enhancers	HSMMtube	muscle

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