Variant report

Variant	rs12098082
Chromosome Location	chr1:226944873-226944874
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12061897	1.00[AFR][1000 genomes]
rs12066190	0.83[AFR][1000 genomes]
rs12071493	1.00[AMR][1000 genomes]
rs12072939	0.86[AFR][1000 genomes]
rs12093806	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096709	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686798	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997468	chr1:226858660-226975311	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv535316	chr1:226858660-226975311	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226942000-226949200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:226942000-226950200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:226943000-226947600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:226943800-226951200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:226944800-226945000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr1:226944800-226951400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links