Variant report

Variant	rs6686798
Chromosome Location	chr1:226946799-226946800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12061897	0.92[AFR][1000 genomes]
rs12071493	1.00[AMR][1000 genomes]
rs12072939	0.94[AFR][1000 genomes]
rs12093806	1.00[AMR][1000 genomes]
rs12096709	1.00[AMR][1000 genomes]
rs12098082	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997468	chr1:226858660-226975311	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv535316	chr1:226858660-226975311	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226942000-226949200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:226942000-226950200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:226943000-226947600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:226943800-226951200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:226944800-226951400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:226945000-226951600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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