Variant report

Variant	rs12098947
Chromosome Location	chr11:36156595-36156596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57412870	0.85[AMR][1000 genomes]
rs7106469	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111128	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv897226	chr11:36139934-36169869	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36137800-36171000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:36145400-36168000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:36145400-36170200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:36148000-36163200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:36148200-36163400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:36148600-36157600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:36148600-36162800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:36150000-36170000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:36150400-36162800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:36151600-36157600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:36152000-36167400	Weak transcription	HSMMtube	muscle
12	chr11:36152600-36169000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:36152800-36157600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:36152800-36157600	Weak transcription	HSMM	muscle
15	chr11:36152800-36162800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:36152800-36163200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:36152800-36167600	Weak transcription	HMEC	breast
18	chr11:36153000-36162800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:36153000-36163400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:36153400-36158600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:36153600-36158600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:36153800-36156600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:36153800-36157400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:36153800-36157600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:36153800-36162600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:36153800-36162600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr11:36153800-36163200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:36154000-36156600	Weak transcription	NHEK	skin
29	chr11:36154000-36157400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:36154000-36161200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:36154200-36163200	Weak transcription	Brain Substantia Nigra	brain
32	chr11:36154200-36170600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:36154200-36171000	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:36154400-36157600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:36154400-36167600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:36154400-36170800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr11:36154600-36156600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:36154600-36171000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:36154800-36161200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:36154800-36169000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr11:36155600-36157000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr11:36155600-36157000	Enhancers	HUVEC	blood vessel
43	chr11:36155800-36157000	Enhancers	Fetal Lung	lung
44	chr11:36156000-36156600	Genic enhancers	Fetal Muscle Leg	muscle
45	chr11:36156000-36156800	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr11:36156000-36157600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:36156000-36158600	Weak transcription	Fetal Brain Male	brain
48	chr11:36156000-36164600	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr11:36156200-36157000	Enhancers	Fetal Kidney	kidney
50	chr11:36156200-36157000	Enhancers	Fetal Stomach	stomach

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