Variant report

Variant	rs7106469
Chromosome Location	chr11:36150487-36150488
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36143036..36146228-chr11:36149921..36153196,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12098947	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6484817	0.86[AFR][1000 genomes]
rs7111128	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv897226	chr11:36139934-36169869	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36133000-36152200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:36136000-36152200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:36137400-36153800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:36137800-36171000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:36139400-36153600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:36143000-36152800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:36144400-36151800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:36145000-36151400	Weak transcription	NHEK	skin
9	chr11:36145000-36151800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:36145200-36153800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:36145200-36154200	Weak transcription	NHLF	lung
12	chr11:36145400-36152400	Weak transcription	Spleen	Spleen
13	chr11:36145400-36168000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:36145400-36170200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:36145800-36151600	Weak transcription	HSMMtube	muscle
16	chr11:36145800-36151800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:36145800-36151800	Weak transcription	HSMM	muscle
18	chr11:36145800-36152000	Weak transcription	HUVEC	blood vessel
19	chr11:36145800-36153200	Weak transcription	Fetal Brain Male	brain
20	chr11:36146200-36150800	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:36146200-36151000	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:36146800-36155600	Weak transcription	Fetal Kidney	kidney
23	chr11:36147000-36151800	Weak transcription	Fetal Intestine Small	intestine
24	chr11:36147000-36153200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:36148000-36163200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:36148200-36152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:36148200-36152600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:36148200-36152800	Weak transcription	Fetal Brain Female	brain
29	chr11:36148200-36154400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:36148200-36155600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:36148200-36163400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:36148400-36150800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:36148400-36153200	Weak transcription	Brain Anterior Caudate	brain
34	chr11:36148400-36153200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr11:36148400-36153600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:36148600-36151000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:36148600-36151800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:36148600-36152000	Weak transcription	K562	blood
39	chr11:36148600-36152200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr11:36148600-36152200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:36148600-36152600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:36148600-36152600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:36148600-36153000	Weak transcription	Fetal Lung	lung
44	chr11:36148600-36153600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr11:36148600-36157600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:36148600-36162800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:36149000-36152200	Weak transcription	Brain Germinal Matrix	brain
48	chr11:36149200-36152600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:36149800-36151400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:36149800-36152600	Genic enhancers	Cortex derived primary cultured neurospheres	brain

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