Variant report

Variant	rs12099135
Chromosome Location	chr11:64205313-64205314
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:64197420-64206402..11:64501239-64517861	GM12878	blood:
2	chr11:64199979..64202076-chr11:64202502..64205332,2	MCF-7	breast:
3	11:64197420-64206402..11:64402707-64415880	H1-hESC	embryonic stem cell:	embryo
4	11:64197420-64206402..11:64489786-64499245	GM12878	blood:
5	11:64197420-64206402..11:64415880-64426617	Hela-S3	cervix:
6	chr11:64204056..64205892-chr11:64210023..64212941,2	K562	blood:
7	11:64197420-64206402..11:64523887-64530985	Hela-S3	cervix:
8	11:64197420-64206402..11:64356433-64395036	K562	blood:
9	11:64197420-64206402..11:64426650-64437729	K562	blood:
10	chr11:64202762..64205386-chr11:64205470..64207937,2	MCF-7	breast:
11	chr11:64202312..64205347-chr11:64215134..64218077,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000181908	Chromatin interaction
ENSG00000068831	Chromatin interaction
ENSG00000110076	Chromatin interaction
ENSG00000197891	Chromatin interaction
ENSG00000237410	Chromatin interaction
ENSG00000068976	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55643628	1.00[AMR][1000 genomes]
rs61761278	1.00[AMR][1000 genomes]
rs7108195	1.00[AMR][1000 genomes]
rs71579882	1.00[AMR][1000 genomes]
rs7944314	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv976459	chr11:64183936-64208134	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv555194	chr11:64189110-64238023	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64201800-64206200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:64203400-64207200	Enhancers	HMEC	breast
3	chr11:64203600-64205400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:64203600-64205600	Enhancers	NHEK	skin
5	chr11:64203600-64208400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:64203800-64205600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:64203800-64208400	Enhancers	Placenta	Placenta
8	chr11:64204000-64205400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:64204200-64205400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:64204200-64206600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:64204200-64208600	Weak transcription	Fetal Brain Female	brain
12	chr11:64204400-64206600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:64204600-64208400	Weak transcription	Fetal Brain Male	brain
14	chr11:64204800-64205400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:64204800-64205400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:64204800-64205800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:64204800-64210000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr11:64205000-64205400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr11:64205000-64205400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:64205000-64205400	Enhancers	Fetal Thymus	thymus
21	chr11:64205200-64205400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr11:64205200-64205400	Bivalent Enhancer	HepG2	liver
23	chr11:64205200-64205600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:64205200-64206600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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