Variant report

Variant	rs12100590
Chromosome Location	chr14:25423104-25423105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25422906..25425550-chr14:25438493..25441061,2	MCF-7	breast:
2	chr14:25422370..25423189-chr14:25504381..25505293,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17109336	1.00[GIH][hapmap]
rs58292742	1.00[ASN][1000 genomes]
rs8009972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25412600-25423600	Weak transcription	Right Atrium	heart
2	chr14:25412600-25426600	Weak transcription	Fetal Intestine Small	intestine
3	chr14:25412600-25426800	Weak transcription	Fetal Intestine Large	intestine
4	chr14:25414200-25424400	Weak transcription	Pancreas	Pancrea
5	chr14:25421400-25423200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:25421600-25423800	Enhancers	Brain Cingulate Gyrus	brain
7	chr14:25421800-25423800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr14:25421800-25423800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:25421800-25424000	Enhancers	Brain Hippocampus Middle	brain
10	chr14:25422000-25424600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr14:25422000-25428400	Weak transcription	Small Intestine	intestine
12	chr14:25422200-25423400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr14:25422200-25423600	Enhancers	Brain Substantia Nigra	brain
14	chr14:25422200-25424000	Enhancers	Brain Angular Gyrus	brain
15	chr14:25422200-25424200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr14:25422200-25424400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr14:25422200-25426400	Enhancers	Left Ventricle	heart
18	chr14:25422200-25427200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:25422400-25423400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr14:25422400-25423400	Enhancers	Adipose Nuclei	Adipose
21	chr14:25422400-25424000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr14:25422400-25425000	Enhancers	Right Ventricle	heart
23	chr14:25422600-25423200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:25422600-25423400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:25422600-25423400	Weak transcription	HepG2	liver
26	chr14:25422600-25423600	Enhancers	Brain Anterior Caudate	brain
27	chr14:25422600-25424000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:25422600-25424200	Enhancers	Fetal Lung	lung
29	chr14:25422600-25426000	Weak transcription	HSMM	muscle
30	chr14:25422600-25426800	Enhancers	GM12878-XiMat	blood
31	chr14:25422600-25428400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:25422600-25428400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr14:25422600-25434000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr14:25422800-25423200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr14:25422800-25423200	Weak transcription	Lung	lung
36	chr14:25422800-25423600	Weak transcription	Fetal Kidney	kidney
37	chr14:25422800-25426200	Weak transcription	Aorta	Aorta
38	chr14:25422800-25428400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:25423000-25427400	Enhancers	Fetal Heart	heart

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