Variant report

Variant	rs17109336
Chromosome Location	chr14:25408092-25408093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12100590	1.00[GIH][hapmap]
rs17109518	1.00[MEX][hapmap]
rs17257605	1.00[ASW][hapmap];0.94[MKK][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs2877685	1.00[MEX][hapmap]
rs3759642	1.00[MEX][hapmap]
rs3759643	1.00[MEX][hapmap]
rs55792144	1.00[EUR][1000 genomes]
rs56253529	1.00[EUR][1000 genomes]
rs57929289	0.85[AFR][1000 genomes]
rs58292742	1.00[EUR][1000 genomes]
rs58544089	1.00[EUR][1000 genomes]
rs59074995	1.00[EUR][1000 genomes]
rs74040705	1.00[EUR][1000 genomes]
rs74040706	1.00[EUR][1000 genomes]
rs74040708	1.00[EUR][1000 genomes]
rs74040710	1.00[EUR][1000 genomes]
rs74040711	1.00[EUR][1000 genomes]
rs74040712	1.00[EUR][1000 genomes]
rs872978	1.00[MEX][hapmap]
rs872979	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25394800-25410400	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:25395400-25410400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:25396600-25409200	Weak transcription	Left Ventricle	heart
4	chr14:25396600-25415800	Weak transcription	Fetal Brain Male	brain
5	chr14:25398200-25409400	Weak transcription	Fetal Lung	lung
6	chr14:25398400-25408600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:25399000-25410600	Weak transcription	Fetal Intestine Small	intestine
8	chr14:25399400-25413800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:25399800-25413400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:25399800-25413600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:25403800-25411400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:25403800-25411800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:25404600-25411800	Weak transcription	Brain Angular Gyrus	brain
14	chr14:25405200-25408400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:25405200-25411800	Weak transcription	Brain Hippocampus Middle	brain
16	chr14:25405200-25411800	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:25405400-25411800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr14:25405600-25408400	Weak transcription	Fetal Heart	heart
19	chr14:25405600-25409200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:25405600-25409200	Weak transcription	Right Ventricle	heart
21	chr14:25405600-25409800	Weak transcription	Pancreas	Pancrea
22	chr14:25405600-25410800	Weak transcription	HepG2	liver
23	chr14:25405600-25412400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:25406400-25412200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr14:25407200-25408800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr14:25407400-25413200	Weak transcription	Brain Anterior Caudate	brain
27	chr14:25407600-25408200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr14:25407800-25408200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr14:25407800-25408600	Enhancers	HSMMtube	muscle
30	chr14:25408000-25408200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr14:25408000-25408200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:25408000-25408400	Enhancers	HSMM	muscle

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