Variant report

Variant	rs74040711
Chromosome Location	chr14:25378063-25378064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17109336	1.00[EUR][1000 genomes]
rs55792144	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56253529	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58292742	1.00[EUR][1000 genomes]
rs58544089	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59074995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74037702	1.00[ASN][1000 genomes]
rs74040705	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74040706	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74040707	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74040708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74040710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74040712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74040714	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25362400-25378400	Weak transcription	Lung	lung
2	chr14:25364800-25379800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:25370200-25379800	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:25370200-25379800	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:25370200-25380400	Weak transcription	Right Atrium	heart
6	chr14:25370200-25380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:25370400-25380600	Weak transcription	Brain Angular Gyrus	brain
8	chr14:25370800-25380200	Weak transcription	Brain Anterior Caudate	brain
9	chr14:25372600-25380600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:25372600-25382400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:25373400-25378600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:25373400-25380400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:25374000-25380400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:25374400-25378800	Weak transcription	Fetal Intestine Small	intestine
15	chr14:25375200-25379000	Weak transcription	Fetal Heart	heart
16	chr14:25376200-25380400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:25377000-25378400	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr14:25377000-25378600	Enhancers	Left Ventricle	heart
19	chr14:25377000-25379800	Enhancers	Pancreas	Pancrea
20	chr14:25377000-25382000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr14:25377200-25378600	Enhancers	Placenta	Placenta
22	chr14:25377200-25379400	Enhancers	Adipose Nuclei	Adipose
23	chr14:25377200-25380600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:25377200-25381400	Enhancers	HepG2	liver
25	chr14:25377400-25378200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr14:25377400-25378600	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr14:25377400-25380000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr14:25377600-25379200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:25377800-25378200	Enhancers	Right Ventricle	heart
30	chr14:25378000-25379200	Weak transcription	Gastric	stomach
31	chr14:25378000-25380200	Weak transcription	Fetal Lung	lung

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