Variant report

Variant	rs56253529
Chromosome Location	chr14:25384273-25384274
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17109336	1.00[EUR][1000 genomes]
rs55792144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58292742	1.00[EUR][1000 genomes]
rs58544089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59074995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74037702	1.00[ASN][1000 genomes]
rs74040705	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74040706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74040707	1.00[ASN][1000 genomes]
rs74040708	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74040710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74040711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74040712	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74040714	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25379400-25397800	Weak transcription	Right Ventricle	heart
2	chr14:25381000-25385400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:25381000-25389800	Weak transcription	Left Ventricle	heart
4	chr14:25381200-25384600	Enhancers	Brain Angular Gyrus	brain
5	chr14:25381200-25384800	Enhancers	Brain Anterior Caudate	brain
6	chr14:25381200-25385200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr14:25381200-25385200	Weak transcription	A549	lung
8	chr14:25381200-25385400	Weak transcription	Stomach Mucosa	stomach
9	chr14:25381200-25387800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:25381200-25388200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:25381200-25389800	Weak transcription	Pancreas	Pancrea
12	chr14:25381400-25385600	Weak transcription	Colon Smooth Muscle	Colon
13	chr14:25381400-25397800	Weak transcription	Fetal Intestine Small	intestine
14	chr14:25382200-25384600	Enhancers	Brain Cingulate Gyrus	brain
15	chr14:25382200-25388200	Enhancers	Brain Substantia Nigra	brain
16	chr14:25382800-25385200	Enhancers	Brain Hippocampus Middle	brain
17	chr14:25382800-25385200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr14:25383200-25385400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:25383400-25386200	Weak transcription	Fetal Heart	heart
20	chr14:25383800-25384600	Enhancers	Fetal Lung	lung
21	chr14:25383800-25385000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr14:25383800-25385400	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr14:25384000-25386400	Enhancers	HepG2	liver
24	chr14:25384200-25385800	Weak transcription	HSMMtube	muscle
25	chr14:25384200-25387600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links