Variant report

Variant	rs12100978
Chromosome Location	chr14:63189213-63189214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10133621	0.84[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs10483754	0.81[MEX][hapmap]
rs11158449	0.81[MEX][hapmap]
rs1490031	0.81[ASN][1000 genomes]
rs1602211	0.85[JPT][hapmap]
rs2087520	0.83[JPT][hapmap]
rs4902176	0.83[ASW][hapmap];0.82[LWK][hapmap]
rs7146105	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63178600-63193000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:63188800-63189400	Enhancers	NHEK	skin
3	chr14:63188800-63189800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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