Variant report

Variant	rs10133621
Chromosome Location	chr14:63207288-63207289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10141683	0.80[AFR][1000 genomes]
rs12100978	0.84[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs1387753	0.93[JPT][hapmap]
rs1387754	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs1490031	0.90[ASN][1000 genomes]
rs1602211	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1826138	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1844509	0.84[ASN][1000 genomes]
rs2087520	1.00[JPT][hapmap]
rs4386055	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs7141875	0.80[AFR][1000 genomes]
rs7143550	0.89[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.80[AFR][1000 genomes]
rs7146105	0.90[ASN][1000 genomes]
rs8017931	0.86[LWK][hapmap];0.82[MEX][hapmap];0.84[MKK][hapmap]
rs8022524	0.86[LWK][hapmap];0.84[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10133621	TMEM30B	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63202800-63212000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:63207000-63207400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:63207200-63208400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links