Variant report

Variant	rs1844509
Chromosome Location	chr14:63273158-63273159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10133621	0.84[ASN][1000 genomes]
rs12435061	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12435655	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1387754	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1490031	0.87[ASN][1000 genomes]
rs1602211	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1826138	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2016794	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2065632	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4386055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4441171	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7146105	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv983834	chr14:63272169-63277791	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
3	esv3353160	chr14:63273142-63277728	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63255600-63274400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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