Variant report

Variant	rs12435655
Chromosome Location	chr14:63245967-63245968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1003309	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs1072022	0.85[CEU][hapmap]
rs11158453	0.88[CEU][hapmap]
rs11158454	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs12431779	0.85[CEU][hapmap]
rs12435061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589217	0.88[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.81[TSI][hapmap]
rs12881113	0.81[CEU][hapmap]
rs12882073	0.81[CEU][hapmap]
rs12883427	0.81[EUR][1000 genomes]
rs1387753	0.88[CEU][hapmap]
rs1387754	0.96[CEU][hapmap];0.96[GIH][hapmap];0.84[LWK][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1475743	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs1475744	0.82[EUR][1000 genomes]
rs1490025	0.89[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs1602211	0.84[CEU][hapmap]
rs1826138	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1844509	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1844510	0.81[CEU][hapmap]
rs1884509	0.88[GIH][hapmap];0.83[LWK][hapmap]
rs2016794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065632	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2087520	0.82[CEU][hapmap]
rs2355733	0.81[CEU][hapmap]
rs4271527	0.88[CEU][hapmap]
rs4386055	0.96[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4441171	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4902186	0.84[CEU][hapmap]
rs4902187	0.96[CEU][hapmap];0.92[GIH][hapmap];0.83[LWK][hapmap];0.82[EUR][1000 genomes]
rs4902188	0.85[CEU][hapmap]
rs8011235	0.88[CEU][hapmap]
rs8014674	0.91[GIH][hapmap]
rs9635173	0.82[CEU][hapmap]
rs9635174	0.82[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12435655	CHURC1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63227200-63246400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:63233200-63248800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:63244400-63246600	Enhancers	Hela-S3	cervix
4	chr14:63244800-63246000	Enhancers	Adipose Nuclei	Adipose
5	chr14:63245000-63246000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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