Variant report

Variant	rs1490025
Chromosome Location	chr14:63281652-63281653
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1003309	0.96[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1072022	0.85[CEU][hapmap]
rs11158453	0.88[CEU][hapmap]
rs11158454	0.96[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs12431779	0.85[CEU][hapmap]
rs12435061	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12435655	0.89[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12589217	0.89[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs12881113	0.81[CEU][hapmap]
rs12882073	0.81[CEU][hapmap]
rs1387753	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs1387754	0.89[ASW][hapmap];0.96[CEU][hapmap];0.96[GIH][hapmap];0.93[LWK][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1475743	0.96[CEU][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs1475744	0.80[AFR][1000 genomes]
rs1602211	0.84[CEU][hapmap]
rs1826138	0.96[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1844509	0.88[EUR][1000 genomes]
rs1844510	0.81[CEU][hapmap]
rs1884509	0.88[GIH][hapmap];0.87[LWK][hapmap];0.96[YRI][hapmap]
rs2016794	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2065632	0.84[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2087520	0.82[CEU][hapmap]
rs2355733	0.81[CEU][hapmap]
rs4271527	0.88[CEU][hapmap]
rs4386055	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs4441171	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902186	0.84[CEU][hapmap]
rs4902187	0.84[ASW][hapmap];0.96[CEU][hapmap];0.92[GIH][hapmap];0.87[LWK][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap]
rs4902188	0.85[CEU][hapmap]
rs8011235	0.88[CEU][hapmap]
rs8014674	0.91[GIH][hapmap]
rs9635173	0.82[CEU][hapmap]
rs9635174	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1490025	CHURC1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links