Variant report

Variant	rs1884509
Chromosome Location	chr14:63248825-63248826
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1003309	0.87[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1072022	0.93[CHD][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs10747298	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs11158453	0.83[CHB][hapmap]
rs11158454	0.89[YRI][hapmap];0.95[AFR][1000 genomes]
rs12431779	0.87[CHB][hapmap];0.93[CHD][hapmap];0.82[ASN][1000 genomes]
rs12433551	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12435655	0.88[GIH][hapmap];0.83[LWK][hapmap]
rs12436815	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12589217	0.89[ASW][hapmap];0.88[GIH][hapmap];0.91[LWK][hapmap];0.96[YRI][hapmap]
rs12881113	0.95[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs12882073	0.86[CHB][hapmap]
rs12882869	0.91[CHB][hapmap];0.91[CHD][hapmap];0.87[MEX][hapmap]
rs12883427	0.95[AFR][1000 genomes]
rs1387753	0.96[YRI][hapmap]
rs1387754	0.89[ASW][hapmap];0.92[GIH][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1475743	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs1475744	0.97[AFR][1000 genomes]
rs1490025	0.88[GIH][hapmap];0.87[LWK][hapmap];0.96[YRI][hapmap]
rs1586649	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs1826138	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1844510	0.83[CHB][hapmap]
rs2015340	0.95[ASN][1000 genomes]
rs2065632	0.83[ASW][hapmap];0.92[GIH][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2355733	0.83[CHB][hapmap]
rs2355734	0.80[ASN][1000 genomes]
rs4271527	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs4902186	0.92[GIH][hapmap]
rs4902187	0.94[ASW][hapmap];0.96[GIH][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4902188	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs8010200	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs8011235	0.82[CHB][hapmap]
rs8014674	0.96[CEU][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs8016650	0.82[AFR][1000 genomes]
rs9635173	0.86[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap]
rs9635174	0.91[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63248600-63249000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr14:63248800-63249000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
3	chr14:63248800-63249000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr14:63248800-63249200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr14:63248800-63249200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr14:63248800-63249200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr14:63248800-63249200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr14:63248800-63249200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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