Variant report

Variant	rs2015340
Chromosome Location	chr14:63262936-63262937
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1003309	0.81[ASN][1000 genomes]
rs1072022	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10747298	0.93[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12431779	0.81[ASN][1000 genomes]
rs12433551	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12436815	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12881113	0.85[ASN][1000 genomes]
rs1586649	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1884509	0.95[ASN][1000 genomes]
rs2355734	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4271527	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4902188	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8010200	0.80[EUR][1000 genomes]
rs8014674	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63255600-63274400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:63262600-63263600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:63262600-63263800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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