Variant report

Variant	rs10747298
Chromosome Location	chr14:63274751-63274752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1003309	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1072022	0.90[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158453	0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs11158454	0.81[CEU][hapmap]
rs1119879	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12431779	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12436815	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs12589217	0.81[CEU][hapmap]
rs12881113	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs12882073	0.80[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs12882869	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap]
rs1387753	0.81[CEU][hapmap]
rs1475743	0.80[CEU][hapmap]
rs1826138	0.85[CEU][hapmap]
rs1844510	0.81[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1884509	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs2015340	0.93[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2355733	0.81[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2355734	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4271527	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902187	0.81[CEU][hapmap];0.95[MEX][hapmap]
rs4902188	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8011235	0.88[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs8014674	0.86[MEX][hapmap]
rs9635173	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs9635174	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv983834	chr14:63272169-63277791	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
3	esv3353160	chr14:63273142-63277728	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10747298	NDUFA7	trans	parietal	SCAN
rs10747298	CHURC1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63274400-63275000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:63274600-63275000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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