Variant report

Variant	rs12882869
Chromosome Location	chr14:63279047-63279048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1003309	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1072022	0.90[ASW][hapmap];0.88[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];0.88[ASN][1000 genomes]
rs10747298	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158453	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1119879	0.82[ASN][1000 genomes]
rs12431779	0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12436815	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap]
rs12589217	0.85[CEU][hapmap]
rs12881113	0.92[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs12882073	0.84[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1387753	0.85[CEU][hapmap]
rs1602211	0.81[CEU][hapmap]
rs1826138	0.81[CEU][hapmap]
rs1844510	0.85[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1884509	0.91[CHB][hapmap];0.91[CHD][hapmap];0.87[MEX][hapmap]
rs2015340	0.95[AFR][1000 genomes]
rs2355733	0.85[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2355734	0.94[ASN][1000 genomes]
rs4271527	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4902186	0.81[CEU][hapmap]
rs4902188	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8011235	0.84[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs9635173	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs9635174	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12882869	CHURC1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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