Variant report

Variant	rs12589217
Chromosome Location	chr14:63279958-63279959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1003309	0.84[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10747298	0.81[CEU][hapmap]
rs11158453	0.84[CEU][hapmap]
rs11158454	0.84[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs12433551	0.84[AFR][1000 genomes]
rs12435061	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs12435655	0.88[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.81[TSI][hapmap];0.92[ASN][1000 genomes]
rs12881113	0.92[CEU][hapmap]
rs12882073	0.85[CEU][hapmap]
rs12882869	0.85[CEU][hapmap]
rs12883427	0.82[AFR][1000 genomes]
rs1387753	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1387754	1.00[ASW][hapmap];0.92[CEU][hapmap];0.96[GIH][hapmap];0.98[LWK][hapmap];0.99[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1475743	0.84[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs1475744	0.87[AFR][1000 genomes]
rs1490025	0.89[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs1602211	0.88[CEU][hapmap]
rs1826138	0.96[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1844509	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1844510	0.85[CEU][hapmap]
rs1884509	0.89[ASW][hapmap];0.88[GIH][hapmap];0.91[LWK][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs2016794	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2065632	0.94[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2087520	0.86[CEU][hapmap]
rs2355733	0.85[CEU][hapmap]
rs4386055	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4441171	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4902186	0.88[CEU][hapmap]
rs4902187	0.94[ASW][hapmap];0.84[CEU][hapmap];0.83[GIH][hapmap];0.91[LWK][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs8011235	0.84[CEU][hapmap]
rs8014674	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12589217	PPM1A	cis	cerebellum	SCAN
rs12589217	CHURC1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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