Variant report

Variant	rs1387754
Chromosome Location	chr14:63271562-63271563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1003309	0.92[CEU][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs10133621	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs1072022	0.81[CEU][hapmap]
rs11158453	0.84[CEU][hapmap]
rs11158454	0.92[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs12431779	0.81[CEU][hapmap]
rs12433551	0.83[AFR][1000 genomes]
rs12435061	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12435655	0.96[CEU][hapmap];0.96[GIH][hapmap];0.84[LWK][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12589217	1.00[ASW][hapmap];0.92[CEU][hapmap];0.96[GIH][hapmap];0.98[LWK][hapmap];0.99[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap]
rs12881113	0.84[CEU][hapmap]
rs12882073	0.84[CEU][hapmap]
rs12883427	0.84[AFR][1000 genomes]
rs1387753	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1475743	0.92[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1475744	0.88[AFR][1000 genomes]
rs1490025	0.89[ASW][hapmap];0.96[CEU][hapmap];0.96[GIH][hapmap];0.93[LWK][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap]
rs1490031	0.91[ASN][1000 genomes]
rs1602211	0.88[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17256687	0.85[CHB][hapmap]
rs1826138	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1844509	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1844510	0.85[CEU][hapmap]
rs1884509	0.89[ASW][hapmap];0.92[GIH][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2016794	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2065632	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2087520	0.86[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap]
rs2355733	0.85[CEU][hapmap]
rs4271527	0.84[CEU][hapmap]
rs4386055	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4441171	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902186	0.88[CEU][hapmap];0.83[GIH][hapmap]
rs4902187	0.94[ASW][hapmap];0.92[CEU][hapmap];0.87[GIH][hapmap];0.89[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4902188	0.81[CEU][hapmap]
rs7146105	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8011235	0.84[CEU][hapmap]
rs8014674	0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1387754	CHURC1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63255600-63274400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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