Variant report

Variant	rs1826138
Chromosome Location	chr14:63275552-63275553
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1003309	0.93[CEU][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes]
rs10133621	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1072022	0.81[CEU][hapmap]
rs10747298	0.85[CEU][hapmap]
rs11158453	0.93[CEU][hapmap]
rs11158454	0.93[CEU][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs12431779	0.81[CEU][hapmap]
rs12433551	0.85[AFR][1000 genomes]
rs12435061	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12435655	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12589217	0.96[CEU][hapmap];0.96[YRI][hapmap]
rs12881113	0.89[CEU][hapmap]
rs12882073	0.85[CEU][hapmap]
rs12882869	0.81[CEU][hapmap]
rs12883427	0.83[AFR][1000 genomes]
rs1387753	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs1387754	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1475743	0.92[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1475744	0.88[AFR][1000 genomes]
rs1490025	0.96[CEU][hapmap];0.96[YRI][hapmap]
rs1490031	0.89[ASN][1000 genomes]
rs1602211	0.89[CEU][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1844509	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1844510	0.86[CEU][hapmap]
rs1884509	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2016794	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs2065632	0.92[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2087520	0.87[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2355733	0.86[CEU][hapmap]
rs4271527	0.85[CEU][hapmap]
rs4386055	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4441171	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4902186	0.88[CEU][hapmap]
rs4902187	0.92[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4902188	0.82[CEU][hapmap]
rs7146105	0.89[ASN][1000 genomes]
rs8011235	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv983834	chr14:63272169-63277791	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
3	esv3353160	chr14:63273142-63277728	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63275000-63278400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links