Variant report

Variant	rs7141875
Chromosome Location	chr14:63206746-63206747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10133621	0.80[AFR][1000 genomes]
rs10141683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10483754	0.96[ASN][1000 genomes]
rs11158449	0.96[ASN][1000 genomes]
rs11627747	0.94[ASN][1000 genomes]
rs11627838	0.96[ASN][1000 genomes]
rs12587728	0.87[ASN][1000 genomes]
rs12885827	0.91[ASN][1000 genomes]
rs4902181	0.95[ASN][1000 genomes]
rs61994833	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7142035	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7143550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7151907	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8017931	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8022157	0.94[ASN][1000 genomes]
rs8022524	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63202800-63212000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:63206200-63207200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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