Variant report

Variant	rs12101557
Chromosome Location	chr15:75215150-75215151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75205785..75208557-chr15:75213491..75215641,2	MCF-7	breast:
2	chr15:75196885..75199275-chr15:75214478..75217231,2	K562	blood:
3	chr15:75210105..75212833-chr15:75214992..75217105,2	K562	blood:
4	chr15:75213925..75215879-chr15:75227652..75232134,4	MCF-7	breast:
5	chr15:75193756..75196013-chr15:75211451..75215315,3	K562	blood:

Variant related genes	Relation type
ENSG00000178741	Chromatin interaction
ENSG00000178761	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12101507	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12442804	0.83[AFR][1000 genomes]
rs2230479	0.90[AFR][1000 genomes]
rs28726277	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58856253	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60698434	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8031052	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8032473	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75199600-75229400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:75199800-75219600	Weak transcription	Aorta	Aorta
3	chr15:75200000-75221000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:75200000-75224000	Weak transcription	Stomach Mucosa	stomach
5	chr15:75200400-75221200	Weak transcription	Fetal Heart	heart
6	chr15:75201000-75224600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:75202000-75224400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr15:75202200-75224400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:75202600-75224800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:75202600-75225000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr15:75203000-75224400	Strong transcription	Fetal Muscle Leg	muscle
12	chr15:75203000-75224600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:75203200-75222200	Strong transcription	Left Ventricle	heart
14	chr15:75203400-75218000	Strong transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:75203800-75223000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:75203800-75224200	Strong transcription	Duodenum Mucosa	Duodenum
17	chr15:75203800-75224400	Strong transcription	Fetal Intestine Large	intestine
18	chr15:75203800-75224600	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:75204000-75216600	Strong transcription	Thymus	Thymus
20	chr15:75204000-75217600	Strong transcription	Lung	lung
21	chr15:75204000-75220600	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr15:75204000-75221800	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:75204000-75222200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:75204000-75222400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:75204000-75224200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:75204000-75224200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:75204000-75224400	Strong transcription	Placenta	Placenta
28	chr15:75204000-75224600	Strong transcription	Liver	Liver
29	chr15:75204000-75224600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr15:75204000-75224800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr15:75204000-75224800	Strong transcription	Fetal Thymus	thymus
32	chr15:75204000-75228400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr15:75204200-75224200	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr15:75204400-75224600	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr15:75204600-75229200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr15:75205400-75216600	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr15:75205600-75222000	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr15:75205600-75223200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr15:75206000-75216200	Strong transcription	A549	lung
40	chr15:75206200-75222200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:75206200-75224400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:75206400-75217800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr15:75206400-75224200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:75206600-75221800	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr15:75206800-75224600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:75207000-75216600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:75207000-75217400	Strong transcription	Stomach Smooth Muscle	stomach
48	chr15:75207000-75217600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:75207000-75225800	Strong transcription	Hela-S3	cervix
50	chr15:75207200-75216200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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