Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:75194246..75197133-chr15:75234346..75235847,2	MCF-7	breast:
2	chr15:75228942..75230559-chr15:75234221..75236529,2	MCF-7	breast:
3	chr15:75228052..75233047-chr15:75233151..75240304,6	K562	blood:

Variant related genes	Relation type
ENSG00000178741	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12101507	0.81[AFR][1000 genomes]
rs12101557	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12437831	1.00[ASN][1000 genomes]
rs12439641	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12440159	1.00[ASN][1000 genomes]
rs12441499	0.86[AFR][1000 genomes]
rs12442804	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12904897	0.81[AFR][1000 genomes]
rs3935818	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4886635	1.00[ASN][1000 genomes]
rs56671860	0.86[AFR][1000 genomes]
rs57498691	1.00[ASN][1000 genomes]
rs58856253	0.82[AFR][1000 genomes]
rs60494786	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs60698434	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7179093	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs729263	0.86[AFR][1000 genomes]
rs8031052	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8032473	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9672491	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75231000-75243200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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