Variant report

Variant	rs9672491
Chromosome Location	chr15:75156487-75156488
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75149519..75152339-chr15:75154126..75156514,3	K562	blood:
2	chr15:75133661..75135523-chr15:75156193..75157818,2	MCF-7	breast:
3	chr15:75155291..75158241-chr15:75246616..75248751,2	K562	blood:
4	chr15:75149519..75152391-chr15:75152798..75156514,5	K562	blood:
5	chr15:75154429..75158026-chr15:75164223..75166299,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140497	Chromatin interaction
ENSG00000140474	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11072511	0.83[AFR][1000 genomes]
rs1130741	0.82[AFR][1000 genomes]
rs12101507	0.84[AFR][1000 genomes]
rs12439641	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12441499	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12442804	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12902515	0.83[AFR][1000 genomes]
rs12903205	0.83[AFR][1000 genomes]
rs12913293	0.82[AFR][1000 genomes]
rs2230479	0.81[AFR][1000 genomes]
rs28726277	0.84[AFR][1000 genomes]
rs3935818	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4886636	0.82[AFR][1000 genomes]
rs56671860	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58856253	0.86[AFR][1000 genomes]
rs60494786	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60698434	0.82[AFR][1000 genomes]
rs7179093	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs729263	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7495739	0.82[AFR][1000 genomes]
rs8025447	0.80[AFR][1000 genomes]
rs8031052	0.81[AFR][1000 genomes]
rs8032473	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75136200-75160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:75136200-75161800	Weak transcription	Fetal Kidney	kidney
3	chr15:75136400-75158000	Weak transcription	NHDF-Ad	bronchial
4	chr15:75136600-75163000	Weak transcription	Fetal Brain Male	brain
5	chr15:75137000-75164800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:75143600-75163000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:75145000-75160000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:75146000-75158200	Weak transcription	NHLF	lung
9	chr15:75146000-75164800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:75146200-75163200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:75146400-75158400	Weak transcription	HUVEC	blood vessel
12	chr15:75146400-75160400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:75146400-75161800	Weak transcription	Fetal Lung	lung
14	chr15:75146400-75163200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:75146600-75159400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:75146600-75159400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:75146600-75160000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:75146600-75163000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:75146600-75164600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:75146800-75158600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:75146800-75159800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:75147000-75158400	Weak transcription	Liver	Liver
23	chr15:75147000-75159600	Weak transcription	Fetal Brain Female	brain
24	chr15:75147000-75160000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:75147000-75164800	Weak transcription	Ovary	ovary
26	chr15:75147200-75159400	Weak transcription	Thymus	Thymus
27	chr15:75147200-75164800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:75150000-75158400	Weak transcription	A549	lung
29	chr15:75150000-75158600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:75150000-75160000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr15:75150000-75160200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr15:75150200-75157800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr15:75150200-75160200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:75150400-75159600	Weak transcription	Dnd41	blood
35	chr15:75150400-75161800	Weak transcription	Aorta	Aorta
36	chr15:75150600-75159600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:75150600-75159600	Weak transcription	K562	blood
38	chr15:75150600-75160200	Weak transcription	Brain Germinal Matrix	brain
39	chr15:75151000-75156800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:75151000-75160000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr15:75151200-75158000	Weak transcription	Small Intestine	intestine
42	chr15:75151200-75161800	Weak transcription	Brain Angular Gyrus	brain
43	chr15:75151800-75160200	Weak transcription	Brain Substantia Nigra	brain
44	chr15:75151800-75161800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr15:75152200-75156800	Weak transcription	Right Ventricle	heart
46	chr15:75152200-75158000	Weak transcription	Fetal Thymus	thymus
47	chr15:75152200-75162200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr15:75152400-75156800	Weak transcription	Psoas Muscle	Psoas
49	chr15:75152400-75156800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr15:75152400-75157000	Weak transcription	Primary monocytes fromperipheralblood	blood

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