Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:75167898..75170533-chr15:75183102..75184983,2	K562	blood:
2	chr15:75163901..75170368-chr15:75180139..75184021,10	K562	blood:
3	chr15:75166812..75168687-chr15:75198514..75200437,2	K562	blood:
4	chr15:75167340..75169926-chr15:75209940..75212819,2	K562	blood:
5	chr15:75166310..75168984-chr15:75177329..75180043,2	MCF-7	breast:
6	chr15:75163277..75165219-chr15:75166368..75168466,2	MCF-7	breast:
7	chr15:75167322..75170039-chr15:75181748..75184414,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178802	Chromatin interaction
ENSG00000178761	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11072511	0.86[AFR][1000 genomes]
rs1130741	0.86[AFR][1000 genomes]
rs11857695	0.83[AFR][1000 genomes]
rs12101507	0.85[AFR][1000 genomes]
rs12437831	0.81[ASN][1000 genomes]
rs12439641	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12440159	0.81[ASN][1000 genomes]
rs12441499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12442804	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12902515	0.86[AFR][1000 genomes]
rs12903205	0.83[AFR][1000 genomes]
rs12904897	0.80[AFR][1000 genomes]
rs12913293	0.86[AFR][1000 genomes]
rs2230479	0.82[AFR][1000 genomes]
rs28726277	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3935818	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4886635	0.81[ASN][1000 genomes]
rs4886636	0.86[AFR][1000 genomes]
rs56671860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57498691	0.81[ASN][1000 genomes]
rs58856253	0.87[AFR][1000 genomes]
rs60698434	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7179093	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs729263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7495739	0.86[AFR][1000 genomes]
rs8025447	0.84[AFR][1000 genomes]
rs8031052	0.81[AFR][1000 genomes]
rs8032473	0.94[AFR][1000 genomes]
rs9672491	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv827388	chr15:75161362-75169121	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75166200-75181000	Weak transcription	Fetal Heart	heart
2	chr15:75166400-75168600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:75166400-75168800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr15:75166400-75174200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:75166600-75176400	Weak transcription	A549	lung

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