Variant report

Variant	rs56671860
Chromosome Location	chr15:75158618-75158619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75153777..75156294-chr15:75158618..75161224,2	K562	blood:
2	chr15:75157220..75162664-chr15:75181204..75183708,6	MCF-7	breast:
3	chr15:75158451..75161193-chr15:75161527..75164480,2	MCF-7	breast:
4	chr15:75156545..75159476-chr15:75183223..75185437,3	MCF-7	breast:
5	chr15:75152352..75156342-chr15:75158618..75163297,4	K562	blood:
6	chr15:75156504..75159434-chr15:75228735..75231326,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178741	Chromatin interaction
ENSG00000178802	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11072511	0.86[AFR][1000 genomes]
rs1130741	0.86[AFR][1000 genomes]
rs11857695	0.83[AFR][1000 genomes]
rs12101507	0.85[AFR][1000 genomes]
rs12439641	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12441499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12442804	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12902515	0.86[AFR][1000 genomes]
rs12903205	0.83[AFR][1000 genomes]
rs12904897	0.80[AFR][1000 genomes]
rs12913293	0.86[AFR][1000 genomes]
rs2230479	0.82[AFR][1000 genomes]
rs28726277	0.86[AFR][1000 genomes]
rs3935818	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4886636	0.86[AFR][1000 genomes]
rs58856253	0.87[AFR][1000 genomes]
rs60494786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60698434	0.85[AFR][1000 genomes]
rs7179093	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs729263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7495739	0.86[AFR][1000 genomes]
rs8025447	0.84[AFR][1000 genomes]
rs8031052	0.81[AFR][1000 genomes]
rs8032473	0.94[AFR][1000 genomes]
rs9672491	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75136200-75160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:75136200-75161800	Weak transcription	Fetal Kidney	kidney
3	chr15:75136600-75163000	Weak transcription	Fetal Brain Male	brain
4	chr15:75137000-75164800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:75143600-75163000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:75145000-75160000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:75146000-75164800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:75146200-75163200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:75146400-75160400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:75146400-75161800	Weak transcription	Fetal Lung	lung
11	chr15:75146400-75163200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:75146600-75159400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:75146600-75159400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:75146600-75160000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:75146600-75163000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:75146600-75164600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr15:75146800-75159800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:75147000-75159600	Weak transcription	Fetal Brain Female	brain
19	chr15:75147000-75160000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:75147000-75164800	Weak transcription	Ovary	ovary
21	chr15:75147200-75159400	Weak transcription	Thymus	Thymus
22	chr15:75147200-75164800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:75150000-75160000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:75150000-75160200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:75150200-75160200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:75150400-75159600	Weak transcription	Dnd41	blood
27	chr15:75150400-75161800	Weak transcription	Aorta	Aorta
28	chr15:75150600-75159600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:75150600-75159600	Weak transcription	K562	blood
30	chr15:75150600-75160200	Weak transcription	Brain Germinal Matrix	brain
31	chr15:75151000-75160000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:75151200-75161800	Weak transcription	Brain Angular Gyrus	brain
33	chr15:75151800-75160200	Weak transcription	Brain Substantia Nigra	brain
34	chr15:75151800-75161800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:75152200-75162200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:75152400-75160200	Weak transcription	Brain Anterior Caudate	brain
37	chr15:75152400-75160200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr15:75152400-75161800	Weak transcription	Brain Hippocampus Middle	brain
39	chr15:75152800-75159000	Weak transcription	Primary B cells from cord blood	blood
40	chr15:75152800-75159800	Weak transcription	Colon Smooth Muscle	Colon
41	chr15:75153600-75162200	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr15:75154800-75160400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:75155000-75158800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:75155000-75159800	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr15:75155000-75160000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:75155000-75160400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:75155000-75162000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:75155200-75159400	Enhancers	HMEC	breast
49	chr15:75155200-75160000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:75155600-75159800	Enhancers	Primary T helper naive cells from peripheral blood	blood

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