Variant report

Variant	rs12101588
Chromosome Location	chr15:60367212-60367213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28433480	1.00[AMR][1000 genomes]
rs28576649	1.00[AMR][1000 genomes]
rs8043321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60357800-60370000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:60358600-60369800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:60363000-60368400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:60363000-60368600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:60365000-60368400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:60365200-60367400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:60365200-60367600	Enhancers	NH-A	brain
8	chr15:60365800-60367600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr15:60365800-60370400	Enhancers	Primary T cells from cord blood	blood
10	chr15:60366000-60367600	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr15:60366000-60367600	Enhancers	Dnd41	blood
12	chr15:60366000-60367600	Enhancers	Osteobl	bone
13	chr15:60366200-60368800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr15:60366200-60369000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr15:60366200-60370600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr15:60366400-60367400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:60366400-60367400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr15:60366400-60367600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:60366400-60369000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr15:60366400-60371800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr15:60366600-60371800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:60366800-60371600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:60367000-60369800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:60367000-60369800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:60367000-60371600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr15:60367200-60369800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:60367200-60370600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr15:60367200-60371200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:60367200-60371200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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