Variant report

Variant	rs28576649
Chromosome Location	chr15:60365500-60365501
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12101588	1.00[AMR][1000 genomes]
rs28433480	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8043321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60357800-60370000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:60358600-60369800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:60360200-60366600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:60363000-60368400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:60363000-60368600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:60363400-60365800	Weak transcription	Primary T cells from cord blood	blood
7	chr15:60363400-60366200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr15:60363600-60366200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:60363600-60366200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:60363600-60366200	Weak transcription	HUVEC	blood vessel
11	chr15:60363600-60367200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr15:60364200-60366400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:60364400-60366000	Weak transcription	Osteobl	bone
14	chr15:60365000-60365600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:60365000-60368400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:60365200-60367400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:60365200-60367600	Enhancers	NH-A	brain
18	chr15:60365400-60365600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:60365400-60366400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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