Variant report

Variant	rs12101782
Chromosome Location	chr15:93357385-93357386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr15:93356593-93357432	MCF-7	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93337836..93370220-chr15:93420085..93452591,332	K562	blood:
2	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
3	chr15:93345383..93371459-chr15:93416796..93454653,318	MCF-7	breast:
4	chr15:93357309..93358856-chr15:93411238..93412934,2	MCF-7	breast:
5	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:

No data

Variant related genes	Relation type
FAM174B	TF binding region
ENSG00000173575	Chromatin interaction
ENSG00000272888	Chromatin interaction
ENSG00000264173	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12101581	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12102230	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28455137	0.87[AMR][1000 genomes]
rs28549279	0.89[EUR][1000 genomes]
rs28602250	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28660596	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28685637	0.87[AMR][1000 genomes]
rs28805897	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28881565	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7181825	0.83[YRI][hapmap];0.87[AMR][1000 genomes]
rs7182474	1.00[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv1042292	chr15:93286333-93374887	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv984199	chr15:93288362-93381522	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
6	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93353000-93363800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:93353200-93361200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:93353400-93361800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:93353400-93362000	Weak transcription	Lung	lung
5	chr15:93354000-93361000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:93354200-93361000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:93354400-93358000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr15:93354400-93358200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:93354400-93358800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr15:93354400-93363200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:93354800-93362600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:93355000-93360400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr15:93355000-93360600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:93355000-93360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:93355000-93361200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:93355000-93361400	Weak transcription	Brain Germinal Matrix	brain
17	chr15:93355000-93361800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:93355000-93362400	Weak transcription	Psoas Muscle	Psoas
19	chr15:93355000-93362400	Weak transcription	Stomach Mucosa	stomach
20	chr15:93355200-93358600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:93355200-93359200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr15:93355200-93360200	Weak transcription	Primary B cells from cord blood	blood
23	chr15:93355200-93360600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:93355200-93360600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr15:93355200-93360600	Weak transcription	NH-A	brain
26	chr15:93355200-93360800	Weak transcription	Osteobl	bone
27	chr15:93355200-93362600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr15:93355400-93360600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:93355400-93360600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:93355400-93360600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr15:93355400-93360600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:93355400-93360600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:93355400-93362000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:93355600-93360200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:93355600-93360600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr15:93355600-93360600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:93355600-93360800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:93355600-93361200	Weak transcription	Fetal Kidney	kidney
39	chr15:93355800-93357400	Enhancers	K562	blood
40	chr15:93355800-93360000	Weak transcription	Fetal Intestine Large	intestine
41	chr15:93355800-93360000	Weak transcription	Fetal Intestine Small	intestine
42	chr15:93355800-93360200	Weak transcription	A549	lung
43	chr15:93355800-93360200	Weak transcription	HepG2	liver
44	chr15:93355800-93360400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:93355800-93360400	Weak transcription	Fetal Brain Male	brain
46	chr15:93355800-93360600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr15:93355800-93360600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr15:93355800-93360600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr15:93355800-93360600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr15:93355800-93360600	Weak transcription	NHEK	skin

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