Variant report

Variant	rs7182474
Chromosome Location	chr15:93363817-93363818
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93337836..93370220-chr15:93420085..93452591,332	K562	blood:
2	chr15:93363773..93364429-chr15:93412657..93413247,2	MCF-7	breast:
3	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
4	chr15:93339771..93341969-chr15:93361778..93364966,3	MCF-7	breast:
5	chr15:93362035..93364370-chr15:93388613..93390406,2	K562	blood:
6	chr15:93178774..93182516-chr15:93362424..93365083,3	MCF-7	breast:
7	chr15:93345383..93371459-chr15:93416796..93454653,318	MCF-7	breast:
8	chr15:93361853..93370156-chr15:93409891..93415394,15	MCF-7	breast:
9	chr15:93363548..93365372-chr15:93384602..93386985,2	K562	blood:
10	chr15:93360172..93364704-chr15:93459982..93465049,6	MCF-7	breast:
11	chr15:93363513..93367138-chr15:93377959..93381843,5	MCF-7	breast:
12	chr15:93363804..93365342-chr15:93390332..93393307,2	MCF-7	breast:
13	chr15:93345748..93348940-chr15:93360001..93364248,4	K562	blood:
14	chr15:93363192..93364882-chr15:93378108..93380631,2	MCF-7	breast:
15	chr15:93362859..93367460-chr15:93410831..93415229,10	MCF-7	breast:
16	chr15:93363530..93364043-chr15:93425198..93426030,2	MCF-7	breast:
17	chr15:93363318..93364083-chr15:93425324..93426235,2	MCF-7	breast:
18	chr15:93360621..93362238-chr15:93362399..93364103,2	MCF-7	breast:
19	chr15:93361450..93364004-chr15:93388773..93390395,2	MCF-7	breast:
20	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:
21	chr15:93361426..93365022-chr15:93477396..93480784,3	MCF-7	breast:
22	chr15:93363339..93364072-chr15:93425987..93426531,2	NB4	blood:

No data

Variant related genes	Relation type
ENSG00000264173	Chromatin interaction
ENSG00000173575	Chromatin interaction
ENSG00000272888	Chromatin interaction
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12101782	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs13329077	1.00[AMR][1000 genomes]
rs28478387	1.00[AMR][1000 genomes]
rs28478893	1.00[AMR][1000 genomes]
rs28541685	1.00[AMR][1000 genomes]
rs28558225	1.00[AMR][1000 genomes]
rs28573371	1.00[AMR][1000 genomes]
rs28699100	1.00[AMR][1000 genomes]
rs28797021	1.00[AMR][1000 genomes]
rs28809217	1.00[AMR][1000 genomes]
rs28836190	1.00[AMR][1000 genomes]
rs7181825	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv1042292	chr15:93286333-93374887	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv984199	chr15:93288362-93381522	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
6	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93355800-93366200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93361200-93364000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:93361200-93366800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:93361400-93365000	Weak transcription	Spleen	Spleen
5	chr15:93361800-93364200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
6	chr15:93361800-93364200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr15:93361800-93364200	Flanking Active TSS	NHEK	skin
8	chr15:93361800-93364400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr15:93362000-93364200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr15:93362000-93364200	Active TSS	Right Atrium	heart
11	chr15:93362000-93364200	Flanking Active TSS	NH-A	brain
12	chr15:93362000-93364200	Flanking Active TSS	Osteobl	bone
13	chr15:93362000-93364400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:93362200-93364200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:93362400-93364000	Active TSS	Psoas Muscle	Psoas
16	chr15:93362400-93364200	Active TSS	Fetal Muscle Trunk	muscle
17	chr15:93362400-93364200	Active TSS	Left Ventricle	heart
18	chr15:93362600-93364000	Active TSS	Right Ventricle	heart
19	chr15:93362600-93364200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr15:93362600-93364200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:93362600-93364200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr15:93362600-93364200	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr15:93362600-93364400	Flanking Active TSS	Dnd41	blood
24	chr15:93362800-93364000	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr15:93362800-93364000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:93362800-93364000	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr15:93362800-93364000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:93362800-93364000	Active TSS	Aorta	Aorta
29	chr15:93362800-93364000	Active TSS	Brain Anterior Caudate	brain
30	chr15:93362800-93364000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:93362800-93364000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr15:93362800-93364200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:93362800-93364200	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr15:93362800-93364200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:93362800-93364200	Active TSS	Duodenum Mucosa	Duodenum
36	chr15:93362800-93364400	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr15:93362800-93364400	Active TSS	Fetal Brain Female	brain
38	chr15:93362800-93365000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:93362800-93366200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:93362800-93366400	Weak transcription	Lung	lung
41	chr15:93363000-93364000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr15:93363000-93364000	Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr15:93363000-93364000	Active TSS	Fetal Intestine Large	intestine
44	chr15:93363000-93364000	Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr15:93363000-93364200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:93363000-93364200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:93363000-93364200	Flanking Active TSS	Fetal Thymus	thymus
48	chr15:93363000-93364200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr15:93363000-93364600	Active TSS	A549	lung
50	chr15:93363200-93364000	Active TSS	Primary T killer memory cells from peripheral blood	blood

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