Variant report

Variant	rs12104067
Chromosome Location	chr18:28839909-28839910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73411052	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9954240	1.00[AMR][1000 genomes]
rs9966227	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28827000-28841400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:28828000-28841400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr18:28833000-28840200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr18:28835600-28841800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:28837200-28841600	Weak transcription	NHEK	skin
6	chr18:28837200-28845400	Weak transcription	Liver	Liver
7	chr18:28838600-28841400	Weak transcription	Fetal Intestine Small	intestine
8	chr18:28839600-28841200	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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