Variant report

Variant	rs73411062
Chromosome Location	chr18:28826491-28826492
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12104067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411052	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9954240	1.00[AMR][1000 genomes]
rs9966227	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28820600-28828000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr18:28822200-28826800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:28824200-28827000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:28824200-28827600	Weak transcription	Pancreas	Pancrea
5	chr18:28824800-28830200	Weak transcription	Left Ventricle	heart
6	chr18:28825000-28826800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr18:28825200-28826600	Enhancers	Fetal Intestine Large	intestine
8	chr18:28825200-28826600	Enhancers	Fetal Kidney	kidney
9	chr18:28825200-28835400	Weak transcription	Right Atrium	heart
10	chr18:28825400-28826600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr18:28825400-28826600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr18:28825400-28827400	Weak transcription	Liver	Liver
13	chr18:28825400-28828000	Enhancers	GM12878-XiMat	blood
14	chr18:28825800-28826600	Enhancers	HepG2	liver
15	chr18:28825800-28827600	Weak transcription	A549	lung
16	chr18:28826000-28826800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr18:28826000-28826800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr18:28826000-28826800	Weak transcription	Hela-S3	cervix
19	chr18:28826000-28827600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr18:28826000-28827600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr18:28826000-28829000	Weak transcription	NH-A	brain
22	chr18:28826000-28831000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr18:28826200-28827400	Weak transcription	HMEC	breast
24	chr18:28826200-28827600	Weak transcription	Fetal Intestine Small	intestine
25	chr18:28826200-28827600	Weak transcription	NHEK	skin
26	chr18:28826200-28828800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr18:28826200-28830200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr18:28826400-28827000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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