Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142519003..142520660-chr2:142522253..142524916,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10164495	0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10185048	0.96[ASN][1000 genomes]
rs10496895	0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10496901	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap]
rs10928122	0.81[CHB][hapmap]
rs11896904	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1437339	0.81[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap]
rs1437340	0.82[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap]
rs16847095	0.81[CHB][hapmap]
rs16847133	0.81[CHB][hapmap]
rs16847142	0.81[CHB][hapmap]
rs16847151	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs16847202	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap]
rs16847228	0.82[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap]
rs16847265	0.81[CHB][hapmap]
rs1816608	0.81[CHB][hapmap]
rs1946779	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2164698	0.91[JPT][hapmap]
rs60606290	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60976197	0.85[ASN][1000 genomes]
rs6721767	0.95[ASN][1000 genomes]
rs6748180	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs7563727	0.82[CHB][hapmap]
rs7584919	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs7604400	0.82[CHB][hapmap]
rs906640	1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs906641	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv459663	chr2:142509570-142568465	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv583236	chr2:142509570-142568465	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1004379	chr2:142514657-142547597	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142523200-142524800	Enhancers	Dnd41	blood

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