Variant report
Variant | rs16847202 |
---|---|
Chromosome Location | chr2:142567436-142567437 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10164495 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes] |
rs10185048 | 0.90[ASN][1000 genomes] |
rs10496895 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10496901 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap] |
rs10928122 | 1.00[CHB][hapmap] |
rs11896904 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12104666 | 0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1437339 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap] |
rs1437340 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap] |
rs16847095 | 1.00[CHB][hapmap] |
rs16847133 | 1.00[CHB][hapmap] |
rs16847142 | 1.00[CHB][hapmap] |
rs16847151 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap] |
rs16847228 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap] |
rs16847265 | 0.90[CHB][hapmap];0.81[JPT][hapmap] |
rs16847310 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs16847314 | 0.82[CHB][hapmap] |
rs16847347 | 0.82[CHB][hapmap] |
rs16847368 | 0.90[CHB][hapmap] |
rs16847376 | 0.82[CHB][hapmap] |
rs1816608 | 1.00[CHB][hapmap] |
rs1946779 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap] |
rs2164698 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
rs60606290 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60976197 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6721767 | 0.85[ASN][1000 genomes] |
rs6748180 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs7563727 | 1.00[CHB][hapmap] |
rs7584919 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs7604400 | 1.00[CHB][hapmap] |
rs906640 | 0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs906641 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834394 | chr2:142430225-142593264 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv459663 | chr2:142509570-142568465 | Weak transcription Enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
4 | nsv583236 | chr2:142509570-142568465 | Weak transcription Enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
5 | nsv875246 | chr2:142527100-142568465 | Weak transcription Enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
6 | nsv875247 | chr2:142527100-142569099 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
7 | nsv875248 | chr2:142527100-142572590 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
8 | nsv875249 | chr2:142527100-142614345 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
9 | nsv875250 | chr2:142540240-142614345 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
No data |