Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142601107..142603350-chr2:142610818..142614066,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10164495	0.90[CHB][hapmap]
rs10496895	0.90[CHB][hapmap]
rs10496901	0.90[CHB][hapmap]
rs10496902	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10928122	0.90[CHB][hapmap]
rs1437339	0.90[CHB][hapmap]
rs1437340	0.90[CHB][hapmap]
rs16847095	0.90[CHB][hapmap]
rs16847133	0.90[CHB][hapmap]
rs16847142	0.90[CHB][hapmap]
rs16847151	0.90[CHB][hapmap]
rs16847202	0.90[CHB][hapmap]
rs16847228	0.90[CHB][hapmap]
rs16847265	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs16847310	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16847314	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16847347	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs16847376	0.91[CHB][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16847412	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1816608	0.90[CHB][hapmap]
rs1946779	0.90[CHB][hapmap]
rs61632456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6748180	0.90[CHB][hapmap]
rs7563727	0.90[CHB][hapmap]
rs7584919	0.90[CHB][hapmap]
rs7604400	0.90[CHB][hapmap]
rs906640	0.81[CHB][hapmap]
rs906641	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875249	chr2:142527100-142614345	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv875250	chr2:142540240-142614345	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142609000-142613800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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